Selected Publications

1. Wen Chen#, Guoqiang Zhang#, Jing Li#, Xuan Zhang, Shulan Huang, Shuanglin Xiang, Xiang Hu*, Changning Liu*. CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs. Nucleic Acids Research 2019; 47(D1):D63-D68.

2. Wen Chen#, Xuan Zhang#, Jing Li#, Shulan Huang, Shuanglin Xiang, Xiang Hu*, Changning Liu*. Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. BMC Genomics 2018; 19(Suppl 2):112.

# Co-first author, * Corresponding author.

Full list of publications

1. Xiaoyang Gao#, Xuan Zhang#, Wen Chen#, Jing Li, Wenjing Yang, Xingwang Zhang, Shengying Li, Changning Liu*. Transcriptome analysis of Paris polyphylla var. yunnanensis illuminates the biosynthesis and accumulation of steroidal saponins in rhizomes and leaves. Phytochemistry 2020; 178:112460.

2. Jun Wang#, Xuan Zhang#, Wen Chen#, Xiang Hu, Jing Li*, Changning Liu*. Regulatory roles of long non-coding RNAs implicated in cancer hallmarks. International Journal of Cancer 2020; 146(4):906-916.

3. Ye Xiao, Shulan Huang, Feng Qiu, Xiaofeng Ding,Yi Sun, Chenxi Wei, Xiang Hu, Ke Wei, Shengwen Long, Lina Xie, Yu Xun, Wen Chen, Zhijian Zhang, Ning Liu*, Shuanglin Xiang*. Tumor necrosis factor α-induced protein 1 as a novel tumor suppressor through selective downregulation of CSNK2B blocks nuclear factor-κB activation in hepatocellular carcinoma. EBioMedicine 2020; 51:102603.

4. Xuan Zhang#, Bang-Zhen Pan#, Maosheng Chen, Wen Chen, Jing Li, Zeng-Fu Xu*, Changning Liu*. JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants. BMC Genomics 2019; 20(Suppl 9):958.

5. Wen Chen#, Guoqiang Zhang#, Jing Li#, Xuan Zhang, Shulan Huang, Shuanglin Xiang, Xiang Hu*, Changning Liu*. CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs. Nucleic Acids Research 2019; 47(D1):D63-D68.

6. Xuan Zhang#, Jun Wang#, Jing Li#, Wen Chen, Changning Liu*. CRlncRC: a novel machine learning method for cancer-related long noncoding RNA identification based on integrated features. BMC Medical Genomics 2018; 11(Suppl 6):120.

7. Jun Wang#, Xuan Zhang#, Wen Chen#, Jing Li*, Changning Liu*. CRlncRNA: a manually curated database of cancer-related long non-coding RNAs with experimental proof of functions on clinicopathological and molecular features. BMC Medical Genomics 2018; 11(Suppl 6):114.

8. Xiang Hu#, Wen Chen#, Jing Li#, Shulan Huang, Xuling Xu, Xuan Zhang, Shuanglin Xiang*, Changning Liu*. ZFLNC: a comprehensive and well annotated database for zebrafish lncRNA. Database 2018; 2018:bay114

9. Wen Chen#, Xuan Zhang#, Jing Li#, Shulan Huang, Shuanglin Xiang, Xiang Hu*, Changning Liu*. Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. BMC Genomics 2018; 19(Suppl 2):112.

10. Shang Wang#, Wen Chen#, Kai Zhang#, Peng Jiao, Lihua Mo, Xiaoxu Yang, Xiang Hu, Jian Zhang, Chenxi Wei*, Shuanglin Xiang*. Restriction-based Multiple-fragment Assembly Strategy to Avoid Random Mutation during Long cDNA Cloning. Journal of Cancer 2015; 6(7):632-635.