sample tissue condition fpkm SRR1021215 sphere stage Mzeomesa 88.6922 SRR1035981 13 hpf rx3+/+ or rx3+/- 82.2596 SRR372793 shield normal 79.5075 SRR1021213 sphere stage normal 77.5189 SRR658533 bud normal 73.3057 SRR372796 bud normal 72.042 SRR658537 bud Gata6 morphant 71.1887 SRR1035978 13 hpf rx3-/- 67.9159 SRR1035984 13 hpf normal 67.3947 SRR372791 dome normal 67.0335 SRR658539 bud Gata5/6 morphant 65.8502 SRR1004788 larvae impdh1b morpholino 59.4433 SRR797914 embryo pbx2/4-MO 58.8159 SRR658545 6 somite Gata6 morphant 57.7081 SRR797917 embryo pbx2/4-MO and prdm1-/- 55.1054 SRR658547 6 somite Gata5/6 morphant 54.2577 SRR658541 6 somite normal 52.9169 SRR1004787 larvae impdh1a morpholino 52.2372 SRR797911 embryo prdm1-/- 52.0905 SRR658535 bud Gata5 morphant 51.8595 SRR748491 germ ring normal 51.4778 SRR1004786 larvae control morpholino 50.6816 SRR797908 embryo normal 49.2643 SRR527840 24hpf normal 41.7402 SRR594769 blood normal 41.2106 SRR658543 6 somite Gata5 morphan 39.7634 SRR1569491 embryo normal 38.551 SRR527836 24hpf normal 37.5276 SRR1004789 larvae impdh2 morpholino 36.8465 SRR527844 24hpf normal 36.6519 SRR748488 sperm normal 36.5791 SRR372798 28 hpf normal 35.0755 SRR372787 2-4 cell normal 32.4351 SRR1534351 larvae 500 ug/l BDE47 treatment 29.923000000000002 SRR801556 embryo RPS19 and p53 morpholino 29.5321 SRR749514 24 hpf normal 29.3802 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 28.8546 SRR1299125 caudal fin Half day time after treatment 28.5974 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 28.2831 SRR1004785 larvae normal 27.0993 SRR801555 embryo RPS19 morpholino 26.8116 SRR535926 larvae normal 26.6735 SRR372789 1K cell normal 26.3137 SRR748490 1 kcell normal 25.8284 SRR535943 larvae vangl mut 25.3508 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 25.2501 SRR514030 retina id2a morpholino 24.7953 SRR748489 egg normal 24.6049 SRR1562530 liver normal 24.509 SRR594771 endothelium normal 23.6976 SRR749515 24 hpf eif3ha morphant 23.5416 SRR1569495 embryo normal 23.4463 SRR1035237 liver transgenic UHRF1 23.359 SRR1708343 embryo MUTAS 22.9836 SRR1005530 embryo RPL11 morpholino 22.9484 SRR800043 sphere stage normal 22.534000000000002 SRR1049814 256 cell normal 22.3323 SRR535986 larvae nhsl1b mut 21.8502 SRR535978 larvae normal 21.7564 SRR700537 heart Gata4 morpholino 21.6688 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 21.6667 SRR535913 larvae krox mut 21.2441 SRR1621206 embryo normal 20.9685 SRR1299126 caudal fin One day time after treatment 20.8347 SRR1708346 embryo SIBPS 20.8046 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 20.7797 SRR372800 2 dpf normal 20.6162 SRR535890 larvae normal 20.1464 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 19.6602 SRR1708345 embryo SIBAS 19.358 SRR1035239 liver transgenic mCherry control 19.2621 SRR1104059 heart kctd10 mut 19.1623 SRR1647681 head kidney SVCV treatment 19.0472 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 18.9704 SRR800046 sphere stage 5azaCyD treatment 18.8243 SRR800037 egg normal 18.3284 SRR800049 sphere stage control treatment 18.3119 SRR1534350 larvae 5 ug/l BDE47 treatment 18.2967 SRR700534 heart control morpholino 18.1843 SRR1708344 embryo MUTPS 17.9497 SRR1534349 larvae DMSO vehicle 17.6566 SRR038627 embryo control morpholino 17.5164 SRR1205160 5dpf transgenic sqET20 and GFP+ 16.6636 SRR527835 tail normal 16.6455 SRR1562531 muscle normal 16.188 SRR1299127 caudal fin Two days time after treatment 16.1002 SRR891504 liver normal 16.0432 SRR1104058 heart normal 15.6864 SRR1647679 head kidney normal 15.286 SRR519752 7 dpf VD3 treatment 15.0049 SRR891512 blood normal 14.975 SRR527832 16-36 hpf normal 14.5345 SRR516133 skin male and 5 month 14.5219 SRR1039571 gastrointestinal diet 0.1 NPM 14.1938 SRR776507 embryo normal 14.0132 SRR1039573 gastrointestinal diet 0.75 NPM 13.7874 SRR038625 embryo traf6 morpholino 13.4094 SRR038626 embryo control morpholino and bacterial infection 13.02 SRR1299128 caudal fin Three days time after treatment 12.8573 SRR776508 embryo miR-146 knockdown 12.8073 SRR1562533 testis normal 12.7719 SRR1205154 5dpf transgenic sqET20 12.6717 SRR514028 retina control morpholino 12.6129 SRR957180 heart 7 days after heart tip amputation 12.3789 SRR633544 larvae exposed to cold stress 12.2553 SRR776510 embryo Salmonella infected and miR-146 knockdown 12.1255 SRR1299129 caudal fin Seven days time after treatment 11.9204 SRR1647680 head kidney SVCV treatment 11.7639 SRR516122 skin male and 3.5 year 11.6695 SRR1005529 embryo control morpholino 11.6218 SRR801554 embryo control morpholino 11.6055 SRR800045 muscle normal 11.4851 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 11.4267 SRR519732 7 dpf FETOH treatment 11.3847 SRR891510 muscle normal 11.0881 SRR516123 skin male and 3.5 year 10.9746 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 10.6399 SRR516127 skin male and 5 month 10.5744 SRR957181 heart normal 10.5411 SRR519737 2 dpf VD3 treatment 10.4754 SRR1647684 spleen SVCV treatment 10.3801 SRR516130 skin male and 5 month 10.3252 SRR535851 larvae normal 10.2296 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 9.98628 SRR1299124 caudal fin Zero day time after treatment 9.975010000000001 SRR065197 3 dpf U1C knockout 9.96306 SRR1167763 embryo ptpn6 morpholino and bacterial infection 9.95903 SRR941749 anterior pectoral fin normal 9.90816 SRR1562532 spleen normal 9.90542 SRR891495 heart normal 9.89461 SRR516128 skin male and 5 month 9.82364 SRR1167762 embryo ptpn6 morpholino 9.77783 SRR941753 posterior pectoral fin normal 9.77612 SRR1188152 embryo Insulin 0.5 hpi 9.75624 SRR1188160 embryo Insulin 4 hpi 9.60764 SRR372802 5 dpf normal 9.57051 SRR516126 skin male and 5 month 9.5129 SRR535850 larvae hoxb1b mut 9.40344 SRR519747 6 dpf VD3 treatment 9.39321 SRR1562529 intestine and pancreas normal 9.3903 SRR516129 skin male and 5 month 9.38667 SRR519717 2 dpf FETOH treatment 9.376710000000001 SRR776509 embryo Salmonella infected 9.1706 SRR1523211 embryo control morpholino 9.10667 SRR1523214 embryo glut12 morpholino 9.07703 SRR1291417 5 dpi injected marinum 8.97814 SRR610741 3 dpf express Ras 8.95647 SRR516121 skin male and 3.5 year 8.92132 SRR516125 skin male and 3.5 year 8.86903 SRR516131 skin male and 5 month 8.84147 SRR1188148 embryo Control PBS 0.5 hpi 8.83279 ERR594418 retina transgenic flk1 and develop tumors 8.771360000000001 SRR038624 embryo traf6 morpholino and bacterial infection 8.50794 SRR633550 larvae exposed to hypoxia stress 8.436819999999999 SRR1647683 spleen SVCV treatment 8.43668 SRR519727 6 dpf FETOH treatment 8.29898 SRR1291414 5 dpi normal 8.17618 SRR1342217 embryo infection with Mycobacterium marinum 8.154689999999999 SRR516124 skin male and 3.5 year 8.02788 ERR023143 swim bladder normal 7.99052 SRR519742 4 dpf VD3 treatment 7.941330000000001 SRR1188156 embryo Control PBS 4 hpi 7.938060000000001 SRR1647682 spleen normal 7.9084699999999994 SRR535847 larvae normal 7.89715 SRR516135 skin male and 5 month 7.81031 ERR023146 head kidney normal 7.6255 SRR630464 5 dpf injected epidermidis 7.4196800000000005 SRR535848 larvae hoxb1b mut 7.3444899999999995 SRR886455 128 cell 4-thio-UTP metabolic labeling 7.24057 SRR610742 3 dpf express NICD 7.2087 SRR527833 5 dpf normal 7.18947 ERR023145 heart normal 7.12245 SRR726540 5 dpf normal 7.061439999999999 SRR519722 4 dpf FETOH treatment 7.045380000000001 SRR065196 3 dpf normal 6.9919 SRR610740 3 dpf normal 6.7542 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 6.7464699999999995 SRR630463 5 dpf normal 6.73548 SRR1167753 embryo bacterial infection 6.66512 SRR726541 5 dpf infection with Mycobacterium marinum 6.50378 SRR535849 larvae normal 6.5006900000000005 SRR1167752 embryo normal 6.49854 SRR535852 larvae hoxb1b mut 6.25434 SRR831692 embryo normal 6.23321 SRR516132 skin male and 5 month 6.18201 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 5.92435 SRR516134 skin male and 5 month 5.76286 SRR726542 5 dpf infection with control 5.72495 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 5.62879 SRR633516 larvae normal 5.5273900000000005 SRR886456 256 cell 4-thio-UTP metabolic labeling 5.36951 SRR1028002 head normal 5.0029 SRR1167756 embryo mpeg1 morpholino 4.98412 SRR1028003 head normal 4.723990000000001 SRR1342218 embryo marco morpholino 4.71194 SRR886457 512 cell 4-thio-UTP metabolic labeling 4.24897 SRR942769 embryo myd88+/+ 4.2157599999999995 ERR023144 brain normal 4.10389 SRR527834 head normal 3.7603400000000002 SRR942764 embryo myd88-/- 3.6937 SRR1565813 brain normal 3.38845 SRR1565805 brain normal 3.1558599999999997 SRR1342216 embryo norml 3.1411700000000002 SRR1167757 embryo mpeg1 morpholino and bacterial infection 2.98305 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 2.9094599999999997 SRR1028004 head normal 2.8042 SRR592701 pineal gland normal 2.69296 SRR1565815 brain normal 2.5939400000000004 SRR1565809 brain normal 2.53018 SRR1565811 brain normal 2.44311 SRR1565819 brain normal 2.21814 SRR1565817 brain normal 2.13511 SRR592700 pineal gland normal 2.0480400000000003 SRR1565807 brain normal 2.02808 SRR891511 brain normal 1.8031599999999999 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 1.45284 SRR1048059 pineal gland light 1.22621 SRR1048061 pineal gland dark 1.05413 SRR592699 pineal gland normal 0.6983159999999999 SRR592702 pineal gland normal 0.671185 SRR592703 pineal gland normal 0.240139 SRR1648856 brain normal 0.22288200000000002 SRR592698 pineal gland normal 0.18504600000000002