sample tissue condition fpkm SRR1035239 liver transgenic mCherry control 2139.25 SRR1035237 liver transgenic UHRF1 1390.88 SRR891504 liver normal 815.8689999999999 SRR1562530 liver normal 801.99 SRR1647682 spleen normal 282.6 ERR023146 head kidney normal 210.452 SRR527835 tail normal 150.535 SRR1039573 gastrointestinal diet 0.75 NPM 137.94 SRR1039571 gastrointestinal diet 0.1 NPM 123.104 SRR1562529 intestine and pancreas normal 119.053 SRR1188148 embryo Control PBS 0.5 hpi 111.221 SRR527834 head normal 106.84 SRR1004785 larvae normal 105.936 SRR527833 5 dpf normal 104.57 SRR726542 5 dpf infection with control 100.90799999999999 SRR726541 5 dpf infection with Mycobacterium marinum 98.844 SRR372802 5 dpf normal 97.9336 SRR1004786 larvae control morpholino 93.5933 SRR1188160 embryo Insulin 4 hpi 92.9923 SRR726540 5 dpf normal 92.1842 SRR1188152 embryo Insulin 0.5 hpi 91.1221 SRR1523211 embryo control morpholino 90.7782 SRR1562532 spleen normal 88.4673 SRR1004788 larvae impdh1b morpholino 86.0343 SRR1291414 5 dpi normal 85.7158 SRR1291417 5 dpi injected marinum 77.8687 SRR1647683 spleen SVCV treatment 76.6664 SRR1523214 embryo glut12 morpholino 76.5795 SRR1647681 head kidney SVCV treatment 76.343 SRR891512 blood normal 68.0801 SRR1188156 embryo Control PBS 4 hpi 62.493 SRR527832 16-36 hpf normal 52.5744 SRR535978 larvae normal 49.1426 SRR527844 24hpf normal 47.4693 SRR038627 embryo control morpholino 47.4165 SRR038624 embryo traf6 morpholino and bacterial infection 46.2921 SRR038625 embryo traf6 morpholino 44.8534 SRR1342216 embryo norml 42.8091 SRR630463 5 dpf normal 40.8226 SRR1005530 embryo RPL11 morpholino 40.738 SRR372800 2 dpf normal 40.6662 SRR1005529 embryo control morpholino 40.5776 SRR801554 embryo control morpholino 40.5165 SRR658533 bud normal 39.7946 SRR1647684 spleen SVCV treatment 38.9373 SRR527840 24hpf normal 38.2289 SRR633550 larvae exposed to hypoxia stress 37.7887 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 37.5099 SRR516124 skin male and 3.5 year 36.9581 SRR633516 larvae normal 35.8634 SRR535986 larvae nhsl1b mut 35.0793 SRR749515 24 hpf eif3ha morphant 35.0493 SRR1648856 brain normal 34.8184 SRR1004789 larvae impdh2 morpholino 33.0031 SRR038626 embryo control morpholino and bacterial infection 32.8105 SRR630464 5 dpf injected epidermidis 32.7949 SRR1562528 eye normal 32.7563 SRR942764 embryo myd88-/- 32.3618 SRR749514 24 hpf normal 32.3355 SRR1167752 embryo normal 32.2843 SRR658539 bud Gata5/6 morphant 31.6047 SRR1004787 larvae impdh1a morpholino 31.2863 SRR065197 3 dpf U1C knockout 31.2428 SRR372798 28 hpf normal 31.2063 SRR1104059 heart kctd10 mut 30.7696 SRR1167753 embryo bacterial infection 30.6232 SRR1342217 embryo infection with Mycobacterium marinum 28.8764 SRR1534349 larvae DMSO vehicle 28.6223 SRR527836 24hpf normal 28.5496 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 27.7434 SRR633544 larvae exposed to cold stress 27.5878 SRR942769 embryo myd88+/+ 26.7405 SRR1647680 head kidney SVCV treatment 26.1692 SRR516133 skin male and 5 month 24.9634 SRR658545 6 somite Gata6 morphant 24.3865 SRR1342218 embryo marco morpholino 23.7891 SRR065196 3 dpf normal 22.9231 SRR1534351 larvae 500 ug/l BDE47 treatment 21.4431 SRR1167757 embryo mpeg1 morpholino and bacterial infection 20.9049 SRR519722 4 dpf FETOH treatment 20.2206 SRR519742 4 dpf VD3 treatment 19.9983 SRR658543 6 somite Gata5 morphan 19.9405 SRR658541 6 somite normal 19.4476 SRR519737 2 dpf VD3 treatment 19.3164 SRR801556 embryo RPS19 and p53 morpholino 19.2654 SRR1167756 embryo mpeg1 morpholino 18.9997 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 18.8823 SRR1534350 larvae 5 ug/l BDE47 treatment 18.8602 SRR610742 3 dpf express NICD 18.2738 SRR519717 2 dpf FETOH treatment 18.1852 SRR658547 6 somite Gata5/6 morphant 18.0616 SRR801555 embryo RPS19 morpholino 17.1959 SRR1708344 embryo MUTPS 16.7569 SRR658537 bud Gata6 morphant 16.7059 SRR1708346 embryo SIBPS 16.2657 SRR797908 embryo normal 15.6305 ERR023145 heart normal 15.5518 SRR797911 embryo prdm1-/- 15.0551 SRR1104058 heart normal 15.0066 SRR1035984 13 hpf normal 14.4998 SRR797917 embryo pbx2/4-MO and prdm1-/- 13.5233 SRR797914 embryo pbx2/4-MO 13.155 SRR535851 larvae normal 13.1323 SRR1035981 13 hpf rx3+/+ or rx3+/- 13.0955 SRR658535 bud Gata5 morphant 12.4174 SRR1028002 head normal 12.3804 SRR535943 larvae vangl mut 12.3546 SRR831692 embryo normal 12.2305 SRR519732 7 dpf FETOH treatment 12.133 SRR1167763 embryo ptpn6 morpholino and bacterial infection 12.0635 SRR776509 embryo Salmonella infected 11.3542 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 11.2223 SRR1647679 head kidney normal 11.2053 SRR1028003 head normal 11.0122 SRR1167762 embryo ptpn6 morpholino 10.6457 SRR1035978 13 hpf rx3-/- 10.6452 SRR1028004 head normal 10.1151 SRR776510 embryo Salmonella infected and miR-146 knockdown 9.855960000000001 SRR776508 embryo miR-146 knockdown 9.77418 SRR535848 larvae hoxb1b mut 9.347669999999999 SRR891495 heart normal 9.146139999999999 SRR519727 6 dpf FETOH treatment 8.96058 SRR776507 embryo normal 8.94997 SRR891510 muscle normal 8.51218 SRR535913 larvae krox mut 8.18096 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 7.850560000000001 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 7.84542 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 7.82435 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 7.571960000000001 SRR535926 larvae normal 7.026730000000001 SRR1562533 testis normal 6.938610000000001 SRR700537 heart Gata4 morpholino 6.623060000000001 SRR1205154 5dpf transgenic sqET20 6.46199 SRR1205160 5dpf transgenic sqET20 and GFP+ 6.14309 ERR023143 swim bladder normal 5.86319 SRR519747 6 dpf VD3 treatment 5.73246 SRR372796 bud normal 5.71243 SRR535890 larvae normal 5.6613 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 5.54535 SRR1648855 brain normal 5.471080000000001 SRR1648854 brain normal 5.4313400000000005 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 5.43124 SRR516131 skin male and 5 month 5.3440199999999995 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 5.29593 SRR519752 7 dpf VD3 treatment 4.94386 SRR1708345 embryo SIBAS 4.47286 SRR535852 larvae hoxb1b mut 3.68325 SRR516121 skin male and 3.5 year 3.50621 SRR516126 skin male and 5 month 3.3763699999999996 SRR516123 skin male and 3.5 year 3.322 SRR1708343 embryo MUTAS 3.1068599999999997 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 2.8796 SRR516135 skin male and 5 month 2.83114 SRR535847 larvae normal 2.5763599999999998 SRR516125 skin male and 3.5 year 2.53 SRR516128 skin male and 5 month 2.4489900000000002 SRR800045 muscle normal 2.3134 SRR514030 retina id2a morpholino 2.29943 SRR748488 sperm normal 1.65382 SRR535849 larvae normal 1.54997 SRR891511 brain normal 1.1357 SRR1562531 muscle normal 1.08915 SRR610741 3 dpf express Ras 0.989044 SRR592698 pineal gland normal 0.98225 SRR1569491 embryo normal 0.669006 SRR592701 pineal gland normal 0.658559 SRR516129 skin male and 5 month 0.6496850000000001 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 0.601981 SRR1048059 pineal gland light 0.556869 SRR592699 pineal gland normal 0.540508 SRR516130 skin male and 5 month 0.48775799999999997 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 0.46997799999999995 SRR800049 sphere stage control treatment 0.43508900000000006 SRR516134 skin male and 5 month 0.42189099999999996 SRR957181 heart normal 0.40562 SRR700534 heart control morpholino 0.400656 ERR594416 retina transgenic flk1 0.375977 SRR592700 pineal gland normal 0.294171 SRR800037 egg normal 0.288457 SRR516132 skin male and 5 month 0.27531100000000003 ERR594418 retina transgenic flk1 and develop tumors 0.26400100000000004 ERR594417 retina normal 0.23900300000000002 SRR1299126 caudal fin One day time after treatment 0.227042 SRR800046 sphere stage 5azaCyD treatment 0.225833 SRR1048061 pineal gland dark 0.222825 SRR1565805 brain normal 0.215383 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 0.186277 SRR1565813 brain normal 0.180755 SRR516122 skin male and 3.5 year 0.171459 SRR1565819 brain normal 0.15437599999999999 SRR957180 heart 7 days after heart tip amputation 0.149814 SRR800043 sphere stage normal 0.14103 SRR1299125 caudal fin Half day time after treatment 0.122552 SRR610740 3 dpf normal 0.113535 SRR1299129 caudal fin Seven days time after treatment 0.112916 SRR1565815 brain normal 0.112874 SRR1569495 embryo normal 0.10118200000000001 SRR514028 retina control morpholino 0.096161 SRR1565811 brain normal 0.08967380000000001 SRR1565807 brain normal 0.0875125 SRR1021213 sphere stage normal 0.0757825 SRR516127 skin male and 5 month 0.07408680000000001 SRR594769 blood normal 0.05994069999999999 SRR1565809 brain normal 0.048628500000000005 SRR748490 1 kcell normal 0.0463667 SRR941749 anterior pectoral fin normal 0.0428711 SRR372791 dome normal 0.0392857 SRR372793 shield normal 0.032370499999999996 SRR1565817 brain normal 0.0305711 SRR1621206 embryo normal 0.020050099999999998 SRR535850 larvae hoxb1b mut 0.00250795 SRR592702 pineal gland normal 0.00023000400000000002 SRR592703 pineal gland normal 0.000161177 SRR594771 endothelium normal 3.60022e-05